Fpr1, a primary target of rapamycin, functions as a transcription factor for ribosomal protein genes cooperatively with Hmo1 in Saccharomyces cerevisiae

Autoři: Koji Kasahara aff001;  Risa Nakayama aff002;  Yuh Shiwa aff001;  Yu Kanesaki aff003;  Taichiro Ishige aff004;  Hirofumi Yoshikawa aff002;  Tetsuro Kokubo aff005
Působiště autorů: Department of Molecular Microbiology, Tokyo University of Agriculture, Tokyo, Japan aff001;  Department of Bioscience, Tokyo University of Agriculture, Tokyo, Japan aff002;  Research Institute of Green Science and Technology, Shizuoka University, Shizuoka, Japan aff003;  NODAI Genome Research Center, Tokyo University of Agriculture, Tokyo, Japan aff004;  Graduate School of Medical Life Science, Yokohama City University, Yokohama, Japan aff005
Vyšlo v časopise: Fpr1, a primary target of rapamycin, functions as a transcription factor for ribosomal protein genes cooperatively with Hmo1 in Saccharomyces cerevisiae. PLoS Genet 16(6): e32767. doi:10.1371/journal.pgen.1008865
Kategorie: Research Article
doi: https://doi.org/10.1371/journal.pgen.1008865


Fpr1 (FK506-sensitive proline rotamase 1), a protein of the FKBP12 (FK506-binding protein 12 kDa) family in Saccharomyces cerevisiae, is a primary target for the immunosuppressive agents FK506 and rapamycin. Fpr1 inhibits calcineurin and TORC1 (target of rapamycin complex 1) when bound to FK506 and rapamycin, respectively. Although Fpr1 is recognised to play a crucial role in the efficacy of these drugs, its physiological functions remain unclear. In a hmo1Δ (high mobility group family 1-deleted) yeast strain, deletion of FPR1 induced severe growth defects, which could be alleviated by increasing the copy number of RPL25 (ribosome protein of the large subunit 25), suggesting that RPL25 expression was affected in hmo1Δfpr1Δ cells. In the current study, extensive chromatin immunoprecipitation (ChIP) and ChIP-sequencing analyses revealed that Fpr1 associates specifically with the upstream activating sequences of nearly all RPG (ribosomal protein gene) promoters, presumably in a manner dependent on Rap1 (repressor/activator site binding protein 1). Intriguingly, Fpr1 promotes the binding of Fhl1/Ifh1 (forkhead-like 1/interacts with forkhead 1), two key regulators of RPG transcription, to certain RPG promoters independently of and/or cooperatively with Hmo1. Furthermore, mutation analyses of Fpr1 indicated that for transcriptional function on RPG promoters, Fpr1 requires its N-terminal domain and the binding surface for rapamycin, but not peptidyl-prolyl isomerase activity. Notably, Fpr1 orthologues from other species also inhibit TORC1 when bound to rapamycin, but do not regulate transcription in yeast, which suggests that these two functions of Fpr1 are independent of each other.

Klíčová slova:

Cell binding – Cell binding assay – DNA transcription – DNA-binding proteins – Saccharomyces cerevisiae – Transcriptional control – Yeast – Chromatin immunoprecipitation


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